Showing posts with label Evolving Health. Show all posts
Showing posts with label Evolving Health. Show all posts

07 November 2012

Why lemurs get sick: A lesson for humans, too


Female blue-eyed lemur
What lessons can humans learn from our far distant prosimian primate cousins about living well and eating a healthy diet?

This was the question on my mind as I toured the Duke Lemur Center in Durham, North Carolina with colleagues attending Science Writers 2012. (Read Christie Wilcox’s full report about our tour over at Science Sushi on Scientific American.)

When I learned on the tour that lemurs were getting sick, I inquired further from our tour guides, education associate Chris Smith and education manager Niki Barnett. The thought of these adorable creatures—somehow related to me because of a common ancestor some 50 to 80 million years ago—suffering from the same types of chronic diseases as modern-day humans encouraged me to want to find out more about their care and treatment.

13 June 2012

Changes in genetic expression during weight loss and weight maintenance

by Amanda Jensen* 

ResearchBlogging.org Losing weight is an ambition with no end. To get fit, live longer, reduce injury, look better, feel better and sleep better will pave the road toward your skinny. Yes, losing weight is known to help the heart and boost insulin sensitivity, but the question still asked is: how?

There are differences between losing weight and keeping it off. From the Department of Clinical Sciences Malmo in Sweden, researchers found seven key genes expressed in adipose tissue (fat tissue) that change with weight loss and weight maintenance—a finding that brings science one step closer to understanding how the body responds to and regulates fat loss.

30 May 2012

Why a fat brain made us more vulnerable to heart disease

Natural selection granted us large brains. The evolutionary cost is having to feed them. The human brain's high-energy demands led to development of a strong preference for fat. We consume more fat than any other primate on average. We are also adapted to more easily digest and metabolize fats.

There are two major kinds of fat that our brains depend on most for its development and regular maintenance. These are the long-chain polyunsaturated fatty acids (LC-PUFAs), omega-3 docosahexaenoic acid (DHA) and omega-6 arachidonic (AA). These two LC-PUFAs can't be made de novo, making them essential in the diet. DHA and AA are supplied by seafood, eggs, or animals. They can also be supplied as their 18-carbon precursors alpha-linolenic acid (ALA) and linoleic acid (LA), found mainly in plants and their seeds.

ALA and LA precursors require conversion to become long-chained through a series of steps of desaturation and elongation. In particular, delta-5 and delta-6 fatty acid desaturases build onto the carboxyl end of the carbon chains of the ALA and LA by introducing double bonds. These converting enzymes are rate-limiting.

The rate-limiting enzymes are encoded into the genome by FADS1 and FADS2. The FADS region has been of special interest to researchers because of variations in single-nucleotide polymorphisms (SNPs) that could lend clues about human evolution including our larger brains. Yet, to date, there have not existed any studies evaluating FADS mutations among humans and related species.

12 August 2011

Lindeberg: Focus on Food Choices, Bioactives, not Nutritionism

Dr. Lindeberg weighing a Kitavan man. 
While training in family medicine, Staffan Lindeberg, M.D., Ph.D., read a paper (published in 1985) in the New England Journal of Medicine that would alter the course of his future research. It was entitled "Paleolithic Nutrition" and one of the authors was Boyd Eaton, M.D.

It was about the same time Dr. Lindeberg had heard from a neighbor that humans had the guts of vegetarian -- to which he responded, "Oh yeah?" His neighbor was  influenced by one of a number of nutrition "stories," as Dr. Lindberg calls them, and not based on actual scientific investigation.

"People like John Harvey Kellog [inventor of corn flakes and strong proponent of a vegetarian diet] has had more influence on thinking about a healthy diet than Darwin has," Dr. Lindeberg says.

27 April 2011

Wake up, Neo-evolution



What would you change about your own naturally evolved, naturally flawed body? Would you choose genetics to avoid diseases like Alzheimer's, diabetes, and cancer? Would you enhance your brain to increase memory and to boost creativity? Would you choose more fast-twitch muscle fibers to run faster or longer? Would you live longer?

These are the questions that Harvey Fineberg, president of the Institute of Medicine, discusses in this new TED talk given in March that was posted only this month. Fineberg says that a new era of neo-evolution -- in which we, as humans, could guide the selection of traits that would define the course of humanity -- is upon us, and he called it "exciting," but "frightening."

I want to answer all of his questions with a "Yes, sign me up!" Who is insane enough to reject a world with an absence of disease, of aging, of dying and death?

Apparently, there are quite a few people. Hava Tirosh-Samuelson, professor of history at Arizona State University, is one of them. Earlier this month, at ASU's Origins Project Science and Culture Festival Tirosh-Samuelson was speaking about a completely different topic when she suddenly surprised us with a few critical words of the "so-called trans-humanist movement."

In a nutshell, her argument is that we still haven't a clue of what humanity is to begin with, so reason suggests against trying to define what it should be in the future. Naturally, after her talk, I decided to ask Tirosh-Samuelson a few questions about her views.

22 February 2011

Pornography in the Primordial Soup

Panel of scientists debate on "What is Life?"

Sometime between 4 and 3.5 billion years ago, the emergence of life had intense beginnings on a young planet in the midst of a so-called primordial soup—consisting of water vapor, carbon monoxide, carbon dioxide, nitrogen, and ammonia and shaped by strong winds, electrical storms, volcanic eruptions, and ultraviolet radiation.

In 1953, Stanley Miller and Harold Urey put Earth's primitive conditions to test for the first time in a famous laboratory experiment. It yielded variety of amino acids and organic compounds. The researchers realized something more: that no early form of life could have ever survived the world of today, because of the presence of oxygen that directly attacks at the bonds that holds together complex molecules.

Scientists also now know that the original blueprint of life was not DNA, but short RNA strands that may have also served as their own biological catalysts, before enzymes ever evolved, providing for self-replication. This early RNA world would eventually give rise to DNA, which used RNA as its template for encoding the genetic information to build proteins.

Still, there are several other questions that remain surrounding life's origins such as How can life be defined? Where did it happen? What came first: replication or metabolism? Could life have happened elsewhere in the universe? What would an alternative form of life and biochemistry look like?

Last weekend, to discuss the questions, a small panel of six scientists gathered at workshop at Arizona State University with a major goal of charting out the steps between the RNA world and greater complexity. Some would say theirs was a hopeless cause and a waste of time.

Then, on Saturday, February 12, a public debate  took place between them with an overarching theme entitled, "What is Life?" Theoretical physicist and cosmologist Lawrence Krauss, ASU professor and director of ASU's Origins Project defended the exercise as uniquely human.

"It's a profound and deep question that hits at everything we think about," Krauss said, noting how the question has a powerful draw. "It sounds like a simple question, the answer isn't so simple. In fact, every time I think about that question, I think about pornography."

He referred to a 1964 Supreme Court case where Justice Potter Stewart once was asked to explain the definition obscene pornography. "I know it when I see it," the judge responded. Krauss said, "In some sense, life is like that."  

Life: Complexity with a Specified Direction

Evolutionary biologist Richard Dawkins further  elucidated the significance of the question in characteristic eloquence, "This may be the only planet in the universe that contains eyes to see it, brains to think about it, and wonder about it. I don't believe that. I suspect there is plenty of life in the universe, but this is the only kind of life we know about."

According to Dawkins, because the laws of physics apply all over the universe, it is likely that life could have materialized many times by the process of evolution by natural selection. Life, then, would have to be defined as anything that is highly statistically improbable, but that appears to have a specified direction.

"You have to add that 'specified direction' because with hindsight you could say any old heap of rubbish is statistically improbable in that there has never been a heap of rubbish exactly the same," Dawkins said. "What's special about life is that living things are statistically improbable in a direction, which you could have specified in advance. It's not always exactly the same, but birds are good at flying, fish are good at swimming, moles are good at digging. All living thins are good at something, whereas lumps of rock aren't.    

Whatever life is, it is characterized by its complex molecules that must somehow create the energy to convert raw material into a structure, all while excluding anything that may be toxic to those reactions of metabolism and reproduction. This is why geneticist and Nobel Laureate Lee Hartwell argued, "Inevitably, life will be cellular. Cells will have been selected to have an optimum size and optimum structure for whatever lifestyle they happen to have."

Searching for a Second Genesis

A sort of definition of what to look for was heartening for NASA planetary scientist Chris McKay, "What Lee said was a beautiful synthesis of how we can search for life, and I want to take that to the specifics of how do we do it in near tem missions in our solar system."

There is an advantage to finding other forms of life in our own solar system, argued McKay, because "then we'd know that life is common in the universe." The task of finding other forms of life in the solar system, even on our own planet, is one promoted by cosmologist and astrobiologist Paul Davies.

Davies doesn't see things quite the same way as McKay. "How can we find this second sample of life? Chris has said one way you can do that is you can go somewhere else in the solar system and find it there. That's great. But it's also very expensive. Is there another way? Well, no planet is more Earth-like than Earth itself. Shouldn't it have occurred many times right here on our home planet? How do we know it didn't?"

While Davies looks for alternative life on Earth—a process that he boldly claims can be completed in less than a decade—biologist and entrepreneur Craig Venter is more interested in creating synthetic life.

Venter explained how he and his colleagues synthesized DNA and chromosomes and inject it into E. coli, which he likened to creating a computer program that builds its own computer, or as he puts it, "A situation where the software actually leads to building its own hardware, but we're trying to go much further. We had to learn how to boot up this bacterial genome."

Change the DNA, change the software, and you change the species, Venter explained, and as others have pointed out, his team did use a living cell, but the cell was the first one to ever have synthetic DNA.

Living Artificial Intelligence

Among these scientists, one thing was certain: the definition of life could not be agreed upon in the face of alternative forms of life in the universe, in our own solar system, on the Earth, or from creating life from scratch. But, perhaps, a definition of life isn't needed after all because, as Krauss put it, anyway, it could change.

"Let me throw it in a completely different direction," Krauss offered in the debate."When computers become conscious, which they will—my Mac is far closer than the PC—will we call them life? And they'll object if we don't, I suspect. I think the definition is a moving target."

After all, the difference from what Venter is accomplishing—with software that makes its own hardware—and computers is that computers simply haven't done that yet (made their own hardware), but when they do, which will happen in at least one or two decades, Krauss said, "they will become the dominant forms of intelligent life on the planet and biology will have to incorporate that in order to keep up."

At the end of the debate, the inevitability of life in the universe was the lesson really learned, given that there could be life lurking almost anywhere.

Be it in a biological world, a  synthetic world, or another kind, life can defined as simply… we'll just know it when we see it.


To read more about the entire weekend conference on origins of life, see Dennis Overbye's article in the New York Times.

UPDATE: the science network has now published the video of this debate. Click on the video to watch below.

20 February 2011

Evolution of Lactose Tolerance in Africa

Sarah Tishkoff
Most African populations have lactose intolerance, but as recently as 3 kya a few pastoral populations have gained the ability to digest milk, which provides evidence of yet another example of ongoing evolution in human population since the time of their origins.

Sarah Tishkoff has been studying this phenomenon of recent lactose tolerance in African pastoralist populations. She shared her findings on Sunday morning at #AAASmtg in Washington DC.

The ability to digest milk as infants is with the expression of lactase-phlorizine hydrolase (lactase), which is specifically expressed by brushborder cells in the small intestine.

But shortly after weaning, the expression of lactase decreases sharply -- that is, except in populations that are lactase persistent. In 2002, an elegant genetic study found the gene for lactase in European populations.

Tishkoff showed us in charts and on a map how she performed genetic studies on the African pastoralist populations with lactase tolerance. Based on the findings, she found a perfect example of convergent evolution -- that several of the populations had developed lactose tolerance in different ways genetically -- because of strong selective pressures to drink milk.

With her latest study and archeological data, she is now tracking the origins of pastoralism. She showed us a map (Smith 1992) where it's clear that most lactose tolerance emerged only in the last few thousand years, but at different times. Her research confirms that pastoralism was brought into southern Africa only recently, most likely from the Great Lakes region.

"So, are humans still evolving? Yes," Tishkoff said.

Why was milk selective pressure so strong? There has been a lot of debate, Tishkoff said, such as whether it is the source of water, protein, or calcium. But it's not everywhere, so there has to have been a cultural transformation in each region.

"There's only some environments that can handle that cultural development," Tishkoff said, but in each case, there has to be an underlying genetic variation and the different variants suggest that perhaps for some populations had a more difficult time with the change or took longer to adapt to it than others.

19 February 2011

Designing biology

DNA
Photo credit: Sara Fulcher on Flickr
Where can we find a cure for cancer, new semiconductor technology, or the solution for turning waste plant materials into biofuels? The answer is enzymes that are produced through "directed evolution," according to Frances H. Arnold, professor of chemical engineering and biochemistry at the California Institute of Technology.

Arnold's lab doesn't synthesize enzymes as other labs do. She and her team "evolve them" toward a certain desired goal in the same way that nature has done it for 3.5 billion years.

Aronold presented an overview of her budding field of work to an audience at American Association for the Advancement of Science annual meeting (#AAASmtg) in Washington DC. The field of directed evolution is relatively new and includes few people at the present time, but Arnold sees high hopes for the future.

"When I started engineering proteins a long time ago, there appeared to me an algorithm that dos a really good job and that's evolution," she said. "Evolution works because the regions that life has discovered and explored are rich in function. Directed evolution exploits smooth paths in the fitness landscape."

The fact is, DNA is cheap and easy. Designing it isn't.

"We're getting really good at making DNA. The price is dropping every day," Arnold said. "But we don't know what to write. We can synthesize any sequence. We can insert new code (referring to Craig Venter's recent success), but we don't know how to write it. We don't even know how to write a single protein."

And, when it comes to enzymes for use inside a complex biological system, she says,"Details matter. We don't understand the details."

Freed from constraints of worrying about biological function, directed enzyme evolution allows Arnold's team to explore new pathways and possibilities.

Arnold presented a few of her enzymes that have been created through directed evolution. Her source materials are from every possible place -- the "heel of your shoe," for example -- and she doesn't limit herself to what's available.

Frances Arnold
By combining several different enzymes and selecting for specific active sites, she can produce more stable proteins that perform practical work.

Where is directed enzyme evolution going in the future? Arnold says that functional protein can be used in several ways. One example Arnold gives is in materials chemistry, such as the work of Angela Belcher of MIT, who uses virus proteins to enrobe minerals onto protein coats.

"You can make a virus that really loves to bind to a single-walled carbon nanogen," Arnold said, which would be a boon for semiconductor technology.

There is really no end to the influence that directed enzyme evolution could have on the world, from highly specific targeting in biological systems to technology.

In short, there's no doubt of an exciting future in intelligently designing new biology.

How environmental change shaped human evolution

Anna Di Rienzo
Humans originated in Africa and then dispersed all over the world to environments that differ in terms of climate, biodiversity, etc, which has brought selective pressures on different populations. At #AAASmtg in Washington DC on Saturday, Anna Di Rienzo presented her research on the how this dispersal has left signatures of adaptation to the pressures. Here are my notes from the talk.

The "Out of Africa" theory has it that humans left Africa 50 Kya and then Neolithic revolution happened 14 Kya. They shifted away from foraging subsistence to horticulture. We also know that levels of human skin pigmentation changed with latitude of populations. In addition, body size and proportions changed. For example, Inuit have quite different proportions for the cold North.

Metabolic traits differ across human populations also, causing disease related traits to occur such as high blood pressure, high triglycerides, or high cholesterol. A prominent example is the rising prevalence of type 2 diabetes. "It's been long proposed that it’s a [genetic] susceptibility to change in lifestyle and diet," Di Rienzo said.

There is a prevalence of inter-ethnic differences in disease and traits. Environmental risk factors clearly play a role in shaping differences. There is a growing conseus that genetic factors also contribute. Is there evidence for genetic – in addition to cultural and physiological – adaptations? How much of the phenotypic diversity is adaptive? What is the contribution of local adaptive traits?

These question led to many studies on signals based on haplotype structure such as lactase persistence, which is common in Europe and in agropastoralist populations, but rare elsewhere. The ability to digest milk in adult life became advantages with the introduction of animal farming, Di Rienzo said. Another example is the FY allele that is fixed in most sub-saharan Africa and is virtually absent everywhere else. FY codes for a chemokine receptor (antimalarial).

Selection for polygenic traits is expected to generate subtle changes in allele frequency at multiple loci. Standard approaches are unlikely to capture these signals. The signature of selection is for monogenic (small shifts) versus polygenic traits.

Her approach is for search of information about environmental selective pressures. She searches for correlations between alledle frequency and environmental variables. She takes into account the geographic structure of human populations shaping distribution.

She used a large dataset of more than 642,000 autosomal SNPs. Environmental variables included climate, ecoregion, and subsistence. Climate includes seasons, ecoregion with temperature, humidity. The genome-wide evidence for environmental adaptations is that most of the genome doesn’t contain genes or variants that affect the function of the genes.

Natural selection acts only on variants that have both functional and phenotypic effects. Is there an excess of test SNPs relative to control SNPs among those with lowest minimum p-values?

The test SNPs used are enriched for SNPs with functional effects. Control SNPs are unlikely to have functional effects (e.g. far from genes).

In all cases, a significant excess of the test relative to control SNPs indicating that environmentals select pressures shaped the geographic distribution of variation in the human genome.

The results suggested genome-wide evidence for environmental adaptations,” Di Rienzo said.

Pancreatic lipase-related protein 2 hydrolyzes galactolipids, is the main component in plants. The truncated PLRP2 protein, which occurs at a higher frequency in those populations with higher consumption of cereal grains. PLRP2 is associated with cereal rich diet.

Two examples of patterns at individual SNPs are “foraging” and “nonforaging” and she shows a slide with patterns showing differences in Africa, Europe and other. In each geographic location, there is a shift in allele frequency that allude to differences in diet of the populations.

The shift in allele frequency is not dramatic, but small. The top signals are with categorical variables like roots & tubers, foraging, polar ecoregion, and a dry ecoregion. Top climate variables have to do with seasons.

“Selection doesn’t act on genes, it acts on phenotypes. The phenotypes are enriched with signals for environmental correlations,” Di Rienzo said.

Disease classes are influenced by environmental selective pressures. Climate influenced cancer, CVD, immune, infection. Subsistence influenced metabolic and reproduction phenotypes. 

The overlaying signals of environmental correlations and genome-wide association studies show this flow:

SNP is affected by environmental correlations and GWAS, then selective pressures produce phenotype. It’s also known that pathogen diversity follows a gradient on climate factors, which can affect immune, autoimmune adaptations.

Di Rienzo made these conclusions from the data:

- Strong GWAS to climate, ecoregion and subsistence
- Signal of adaptation to environmental pressures are subtle, but consistent shifts in allele frequency
- Adaptation to local environ and common disease may have similar gene architecture
- Signals of climate correlations make a contribution to diseases of immune response and pigmentation traits

More information can be found at dbCLINE

23 December 2010

How diet shaped human evolution

Anyone who is keenly interested in having a better understanding of why we eat what we eat as human beings should take an hour or so to watch this introductory talk given by anthropologist Teresa Steele, of UC Davis, given at the California Academy of Sciences on the topic of evolution of the human diet.

I found her talk fascinating, especially because I've been highly interested in how the use of fire and aquatic animals may have played a part in fueling human brain growth, so I ended up taking copious notes. I should note that there isn't anything new presented here, but Steele is excellent at presenting the chronology. If you don't have an hour to watch, then just see my notes below chapter by chapter from "Australopithecus to agriculture."

Human diet is unique among apes

Steele finds that diet is central to her research. "If we want to live, we have to eat," she says. Food is what ultimately supports demographic populations. One thing that is unique about humans in comparison to other apes is a long childhood, a long learning period, that is required for acquiring the knowledge necessary to become successful foragers in a wide environment. After all, humans have exploited almost every nutrient resource in their short time on the Earth.

Another unique thing is how much meat we consume. A large portion of our calories comes from meat. Unlike chimpanzees, who eat the most meat among apes, human eat about 10 times more, Steele said. And we eat animals that are usually larger than us like wildebeasts, reindeer, and mammoths. Steele shows a graph comparing chimp diets to that of tropical hunter gatherers groups, who typically eat little meat. Other hunter-gatherers of the North like the Inuit eat a diet almost entirely of meat. In general, humans specialize in acquiring nutrient-dense foods meats, tubers, and nuts, while chimps select non-nutrient dense like leaves that are more easily collected.

Research themes

When did these differences evolve? Steele presents us with her research themes, which include the following:

  • Meat eating. We are consuming animals that are larger than ourselves like wildebeast, reindeer, horses, and so on. Chimpanzees hunt for colobus monkeys, birds, and small amphibians. So when did meat eating appear and when did the transition occur to eating animals larger than us?
  • Hunting technology. What technology did humans use to acquire large animals? Spears, bows and arrows, projectile technology? These are complex, so they can represent greater cognition. When did they occur?
  • Intensification of resource use, including agriculture. This happened much more recently.
Methods of Study

What methods does Steele use to construct ancient human diets? She says that zooarchaeology and tool analyses gives us a window into ancient demographies. There are stone, bone and antler tools. And, on occasion, organic wood and plant tools are preserved. Also, biological anthropology helps tell us more such as skeletal morphology and bone chemistry.

Lucy's diet

Steele introduces the diet of Lucy's species first, Austrolopithecus afarensis of 3.7-2.8 mya, who ate a flexible diet suitable for a variety of habitats.

The skeletal biomechanics and dental structure suggest they ate mostly soft fruits and occasional hard seeds. However, Steele says we assume that they may have eaten some meat because chimps eat meat, but it's unclear just how much.

She points out that, recently, there was a groundbreaking discovery published in Nature (and reported in Scientific American by the science writer Kate Wong (Twitter: @katewong) ) of cut-marked bones in Dikika, Ethiopia suggesting Lucy's species even used stone tools for eating meat.

"This has opened up a window," Steele says for more research, especially in the possibility of stone tool use for extracting nutrients from carcasses of smaller animals. It's worth noting that no stone artifacts were found associated with the cut-marked bones (paleoanthropologist John Hawks (Twitter: @johnhawks) has written more about this topic on his blog).

Cut-marked bones 2.5 million years ago

Typically, a discussion of human diet begins at about 2.5 mya when there is an abundance of cut-marked bones (such as the jaw of a wildebeest) and percussion marks from marrow extraction. Marrow has been an important human resource for nutrients up until modern times because it's high in fat, high in calories.

There is also evidence of Oldowan artifacts (hominin stone tools) available so we know what they were using to get to the marrow.

Then, at about 1.8 mya there are a lot more assemblages, more stone tools, as found in Olduvai Gorge, Tanzania, by Mary Leaky. There are also lots of large bodies bovids and carnivores on the landscape. Steele asks, How did these ancient hominids acquire these large carcasses? Is it conceivable that they could've brought down a wildebeast with just tools?

This is where we get into a discussion of scavenging versus hunting, she said. A related discussion is what percentage of the diet was meat-based versus plant-based. Also, were these ancient hominins practicing passive scavenging getting to a carcass to get the last scraps of meat or breaking open bones for marrow. Or was it active scavenging, chasing off carnivores?

These are all active areas of research. For answers, researchers look in locations of lakeside margins. Bovids came to drink, carnivores know this, we look into these locations to try and reconstruct the foraging.

Aquatic animals

Published recently in the springtime, was a paper suggesting that 1.9 mya in East Turkana, there's evidence of Oldowan foraging of carcasses of aquatic animals like crocodiles and turtles. Steele shows a cut marks on a toe bone of a croc, turtle shells and catfish bones.

"For the first time, we see exploitation of aquatic resources highlighting the diversity of diet. Hominins are very opportunistic, exploiting whatever was available," Steele said.

"This also raises a challenge as with cut-marked bones with Dekika, to try to see if there are cut-marks on similar bones," Steele explains. "The small animal component has been overlooked so we may need to look closer."

Steele also discusses another interesting aspect of using aquatic resources (which will interest any nutritionist like myself). The aquatic resources would have been an easier way to access long-chain omega-3 fatty acids, which are also present in organ meats and brain tissues of large animals.

"The long-chain unsaturated fatty acids are needed for brain growth," she explained. "At this time period we do see an expansion of brain sizes, so perhaps there's a relationship here. We need more data, more examples where we see brain expansion with this kind of diet."

Archeulean hunting and scavenging

Moving more recently in time, we see Homo erectus, hominins of larger body size, and who were first to populate Eurasia 1.6 mya to 285 kya. Were they hunting or actively scavenging? This is unclear, but earlier in Archeulan, we see evolution of technology.

Tear-drop shaped hand axes appear and body size changes. The humans are obviously living in social groups. An illustration she uses takes the liberty of showing piles of plant remains used to make wooden spears. The plant use is unknown.

There are a large number of animal bones with few cut marks. So, the question remains, were hominins still minor players as carnivores, simply cutting off limbs and eating elsewhere. The challenge is finding places away from water sites such as in caves.

Also, we start asking questions about use of fire at this time period.

Wood spears

At around 400 kya, Steele shares that there are one or two examples of exceptional preservation of organic materials such as wooden spears (survived in an oxygen-poor environments from marshes of Germany). They are more likely to be thrusting spears. They have been fire-hardened, sharpened, so it indicates use of fire.

Fire is really useful for warmth, protection from predators, for cooking and cooking really changes the nature of food. It helps make inedible foods edible, releases nutrients for our digestive systems. But fire doesn't preserve well.

The earliest known site where fire is documented is in Israel, dated to 780 kya. "We have an indicator of fire use and plant remains. They're preserve better once charred in archaeological sites," Steele says. "We don't find it common until about 300,000 years ago." This is between Oldowan and modern behavior in the Archeulian.

Neandertals

About 200 kya came the Neandertals and they were competent hunters and manufacturers of stone tools. Interestingly, despite these complex behaviors, they did not have as long a childhood. The Neandertals were able to pick up their abilities pretty early in life.

As part of her post-doc in Germany at Max Plank Institute, Steele worked with identifying species in archaeological sites where Neandertals hunted reindeer and bison. She showed antlers, elbows of reindeer fractured for extracting marrow, and examples of bones in discard piles due to little meat.

"We also see very little carnivore involvement and abundant human impacts, unlike the earlier where there was very heavy carnivore involvement meaning humans were hunting," she said. The Neandertals were dominant carnivores by this time.

Now we can ask about hunting strategy. Steele explains she uses a very low tech method: "We have a number of mandibles, so just looking at the eruption of teeth, we can reconstruct ages of animals." Also, reindeer are conveniently sexually dimorphic and because reindeer give birth at a moment in spring (babies are born at once) we can look at eruption of teeth to see if they're hunted. In a specific location, all ages are present, males and females, so it looks like the reindeer herd would have been slowed allowing the humans to hunt more of them.

Bone chemistry

Carbon isotopes tell us about the vegetation in the environment and nitrogen isotopes tell us about the trophic levels. Carnivores have more concentration of nitrogen. Animals that are aquatic even more nitrogen, so we can look at bone chemistry to reconstruct diet. There aren't much indicators of plant remains, but in a Neandertal tooth you see it's heavily etched by roots because of the acid of roots. The bone chemistry data put Neandertals right along the lines of other carnivores. The majority of protein came from meat (although not mentioned in the talk, new findings show they also practiced cannibalism, reported via science writer Carl Zimmer (Twitter: @carlzimmer)).

Hunting technology

How were the Neandertals doing the hunting? It appears they were using thrusting spears. We know this because it's possible to look at stone artifacts to see if they are aerodynamic or more asymetrical and lumpy for a thrusting spear. We can look at the breakage of the tip as well as the butt. In characteristic way we can look at the breakage.

Middle stone age in Africa 285,000

So while Neandertals are doing their thing in Europe, what's going on in Africa? In Africa, we have the middle stone age and humans who were morphologically similar to us. The big discussion in paleoanthropology is, How modern were they? Did they have symbolism? Were they just like us or behave more like Neandertals without as much symbolism?

In the middle stone age we have good evidence of hunting and burning. There was abundant burning. But, within the middle stone age, we see no evidence of consumption of fish. The people seem to be limited in capturing fish and birds, although there were people accessing coastal resources along the southern coast of Africa, eating a number of mollusks. Could mollusks have fueled brain growth and brought with it symbolic behavior? There were also a number of fireplaces. Did fire fuel brain growth (if you ask primatologist Richard Wrangham as I did last February, then the answer is a resounding "yes!")? This is something that requires further research.

Modern humans in Europe

In Europe about 40 to 10 kya, we have Upper Paleolithic with fully modern humans in Europe. They hunted large game similar to Neandertals and with projectile technology unlike Neandertals. People who were just like us in biology and behavior. This is when we see projectiles for the first time. We see the reconstruction of a spear thrower, with an adle addle.

These modern humans then also enjoyed a diverse diet with abundant small game like fish and flying birds. That's quite different than what their Neandertals cousins were doing, and what humans in Africa of the middle-stone age were doing.

We can also see this in the bone chemistry of the Upper Paleolithic humans. There was definitely protein coming in from aquatic sources, per the nitrogen values in the bones. It's also clear from the bone chemistry that modern humans were eating a much more diverse diet.

Plant use

Getting back to plant use, just recently in PNAS, an article was published about use of plants in Paleolithic times. Grindstones and pestles were used to grind starch grains, reeds, cattailes and ferns that have underground storage organs (roots). These grindstones pulverized the roots and perhaps made flour out of them. So, this is it, the diversity of diet that spread from Africa about 50 kya, and support for the hypothesis that humans replaced Neandertals because of flexibility of diet. Is this what allowed humans to be more successful?

Intensification of resource extraction, including agriculture

Bringing us into more recent time period to complete the story, 50kya humans colonized Europe and Asia and Australia. At around 15kya, they colonized the new world. So, by 10kya we have humans everywheere by 10kya other than Pacific islands and Antarctica. Diet tends to evolve and change. Humans don't stay focused on large game, and birds and fish. They intensify. What we see with intensification in the Holocene is the use of technology to extract nutrients from resources.

Steele shows pictures of mussel shells having accumulated over a short period of time. There was a heavier investment in technology. This creates a stable food supply that allows populations to grow. "We can see this in our local California native indians," she said. Just to highlight investment in technology, she shows slides on the natives' use of technology. "These are all the steps to take acorns and make it into something consumable. They're toxic, so you have to dry them, pulverize and leach them. It requires very heavy technological input."

The intensification brings with it the origins of agriculture at 10 kya. At 10kya we see changes in environment tha promote plant resources, a shift in global climate where there's more CO2, a more wet and stable environment, more admittable to plant production. People are becoming more dependent on smaller resources from agriculture. The fish, they help populations to grow and hunter-gatherer populations are more stable. It's clear from her slide that because of agriculture, there's an uptick in human population growth. Then, when industrialized agriculture arrives, there's an inflection point when we see a high rate of population growth. That's where we are today in the evolution of human diets. That's 4 million years (in 40 minutes).

Question 1: Why did humans replaced Neandertals?

The first question posed to Steele after her talk was about her thoughts were about why humans replaced Neandertals. She answered, "Yes, I think ultimately it's due to dietary differences." There's not much differences in species hunted, not so different butchery, but you do see a difference in stone artifacts and projectile points. The modern human tools were more reliable and accurate. They would've been able to obtain a larger number of reindeer, and been more consistent in hunting, along with having a more diverse diet.

The more ultimate explanation, however, was if it was cultural. Did modern humans have a more complex language? Could symbolism have allowed us to communicate in a more effective way, made our hunting more effective, that's where we're going now with the research. Language is fundamental, so if we can track where language evolved, then we'll find more answers?

Question 2: What conclusive evidence is there of cut marks?

The question asked to Steele reverted back 3.2 mya to how solid the evidence was of Australopithecus afarensis making cut marks. Steele answers that the cut marks are just as conclusive as later time periods. "If we are going to accept the later cut marks, then we have to accept the earlier," she said. "For me they're fine in terms of more recent assemblages. The challenge is to find more cut marks to see if it was widespread or a one-time thing. Who made them? Where are the stone tools?" That's the next project.

Question 3: What ratio of fatty acids in diet correspond to brain size?

Lastly, an audience member asked if recent work on long-chain omega-3s on mood disorders supports the theory that omega-3s from aquatic resources fueled brain growth. The quiestoner also mentions work by others on omega-3 to omega-6 ratios, which has changed since huntergatherer times (from 1:1-3 to 1:10 to 1:20). Could this be the reason that brain sizes are getting smaller?

Steele answers that, in general, there's body size reduction and brain size reduction. Hunter-gatherers of the anthropological record were quite robust. Now we see decrease in stature, brain size reducing, body size reducing. The change in body shape may be due to changes in diet. Whether it's omega-3/omega-6? Steele says she couldn't say for sure if that's the case.

(Note: Hat tip to @KeithNorris and @evolvify (see blog post here) for first alerting me to this new video via their tweets).

24 November 2010

Food sharing: Hunter-gatherer "health insurance"

Kim Hill
By pure chance (involving a failed attempt to go hiking and a speeding ticket), I found myself at a talk given by anthropologist Kim Hill, speaking on the "Emergence of Human Uniqueness: Characteristics Underlying Behavioral Modernity."

I previously wrote an article for Scientific American on an Arizona State University workshop that Hill headed up along with Curtis Marean and Lawrence Krauss last February.

Most of Hill's talk was basically the same stuff I wrote about before like that humans are outliers, not unique in any specific way, but contain a combination of non-unique traits that arose through non-unique processes produced a unique outcome -- a "spectacular anomaly."

"If aliens from outerspace came to the Earth," Hill said, then they would be questioning humans instantly because we're so dominant in several ways: technologically, agriculturally, population-wise, etc.

Some would point to the industrial revolution, but Hill argues that hunter-gatherers would have still attracted aliens' attention because they were still the most prosperous species even before agriculture.Humans engage in more ecological niches than all other species combined.

Besides humans, the most successful terrestrial vertebrate is "Canis lupus" (wolves, and that's not counting dog domestication). Both humans and wolves share something in common: cooperative breeding.

So, how do you get this spectacular anomaly?

Hunter-gatherers colonized all the land mass, produced massive megaliths, created complex institutions, and developed languages and cultures.

Hill discusses how he and other scientists came together to discuss what makes humans unique looking at fields of primatology, evolution, hunter-gatherer work, etc.

What makes us uniquely human is a combination of traits that were critical for producing outlier outcomes:

-Cumulative culture
-Cooperation
-Language
-Cognition

OK, so we know all of this. But now here's the interesting part!

Hill showed data from his work that has to do with the economics of cooperation in humans as compared to chimps. Humans are hypercooperators.

What led to hypercooperation in humans?

Hill discusses that it may be due to:

a) a shift on the feeding niche going from collected foods to extracted foods and predation. This is shown in the paleoanthropolical record from 1) emergence of waist, 2) evidence of cooking, 3) stone tool cut marks.

b) extracted and hunted foods caused by juvenile dependence and long learning period.

Basically, adults need to take care of children for several more years in comparison to chimps. Human kids produce virtually nothing, even as they grow older they produce little versus the adults.

c) high variance in large-package foods promotes food sharing

In other words, Kim says, some adults are hunting and bringing home lots of food, way more than they can eat, or that their nuclear family can eat. This promotes food sharing.

He gives an example of the Ache tribe (hunter-gatherers from Paraguay who he's studied for over 30 years) and how at the end of the day everyone brings their extra food to distribute among the group. Children too are taught to share food from the time they're two years old.

Hill gives data on the percent of food types that are kept versus produced by a nuclear family. Some families give away the majority of food (70 to 90 percent!) they produce (and he joked about comparing that to a tax bracket and socialism).

Food sharing among hunter-gatherers is interesting and complicated, Hill says. The sharing is a type of "health insurance" so that if a man, for example, gets sick or injured taking him out of the production three months, he is covered by the sharing of others. He gives data on "health insurance premiums" given by hunter-gatherers like Ache, Efe, Yora, Tsimane.

Food sharing networks helped us survive and have long lives, Hill said. Because in comparison to chimps, humans have less risk of premature death because if a "chimp falls out of a tree and breaks its arm, it's dead" even though the chimp will heal simply because it will starve to death.

Hill then gave more data on hunter-gatherer habits of women overproducing and then led into cooperative breeding, which is reproducing with the help of others in birth and child rearing.

And, again, wolves are also cooperative breeders, so it's definitely an effective strategy.

"What we now know," says Hill, "is that individuals go through periods of time when they are producing a surplus and other times when families cannot feed all the mouths they have."

To illustrate the point, Hill shows us a picture of a typical hunter-gatherer family that has breeders, helpers, and dependents. He gives data on how these families subsidize food.

"It takes a 'band' to raise a child," is typed up on the slide.

He compares hunter-gatherer systems to an institutionalized social security system. "This is a universal pattern among hunter-gatherer societies," he says. A family without this would not be able to be successful. Kinship like cousins, aunts, and uncles are usually the foundation of human cooperative breeding.

But Hill has been studying how kinship moves to larger social organizations of hunter-gatherer societies.

He showed how chimp communities often are not in contact with each other and often kill each other. But, based on work by Bernard Chapais, pair bonding -- transferring females among groups, for example -- which leads to cooperation between groups.

When a sister is married to a man in another group, a brother will create an alliance with the husband. It leads to sharing food communally.

Hill said people like Paul Davies who are looking for alien species should not be looking for "intelligent life on other planets," but actually be looking for cooperative species -- species that work together to accomplish big tasks.

"Chimps are intelligent and dolphins are intelligent," he said, "but ants are closer to building a spaceship than chimps."

Learn more link: Here's some other crazy neat info from Hill on Amazonian hunter-gatherers widespread belief that they have multiple fathers.

28 July 2010

If You Ever Had Doubts About Our Ancestors Eating Shellfish, See Curtis Marean's Feature

When the Sea Saved HumanityPowered by Ergo:Ux

04 July 2009

Why so many proteolytic enzymes?

When studying the evolution timeline that led to modern biochemistry, one can always turn to studying protein architecture. Proteins have been called “molecular fossils” that serve to mark milestones in the “history of life” (1). There is a wide diversity of proteolytic enzymes in humans and the network of enzymes have a grand complexity that calls for investigation of how they were shaped over time (2).

In digestion there is a variety of proteolytic enzymes—pepsins, enteropeptidases, carboxypeptidases, and aminopeptidases (3). Each work to hydrolyse proteins by cleaving off amino acids from differing peptide bonds, in different stages and conditions (gastric, pancreatic and intestinal phases) and at varied pH ranges (3). The system is indeed complex, not exactly perfect (a better system may have used only a one or two enzymes), but it works and that's evolution.

Each highly structured enzyme would have evolved accordingly at some time, and some, which may have had major roles in the past, have only minor ones now. An example of biochemical “fossils” studied currently in Germany are particular aspartic proteases (4). They are structurally similar to other proteases suggesting a common "major role" ancestor", but have evolved now only to act in “chaperone-like” fashion for substrate binding in digestion (4).

More than 2 percent of human genes are proteases or protease inhibitors (5). New genomic data is expected reveal more about how proteases, their substrates, proteolytic complexes, inhibitors, and interactions all co-evolved (5;6). The complete human degradome—set of protease genes—is also being compared with degradomes of other mammals such as chimpanzees and mice and serving to provide further understanding of ancestral relationship of species (5;7).

Reference List

1. Caetano-Anolles G, Wang M, Caetano-Anolles D, Mittenthal JE. The origin, evolution and structure of the protein world. Biochem J 2009;417:621-37.
2. Page MJ, Di CE. Evolution of peptidase diversity. J Biol Chem 2008;283:30010-4.
3. Devlin TM. Textbook of Biochemistry with Clinical Correlations. Philadelphia: Wiley-Liss, 2002.
4. Hulko M, Lupas AN, Martin J. Inherent chaperone-like activity of aspartic proteases reveals a distant evolutionary relation to double-psi barrel domains of AAA-ATPases. Protein Sci 2007;16:644-53.
5. Puente XS, Sanchez LM, Gutierrez-Fernandez A, Velasco G, Lopez-Otin C. A genomic view of the complexity of mammalian proteolytic systems. Biochem Soc Trans 2005;33:331-4.
6. Southan C. Exploiting new genome data and Internet resources for the phylogenetic analysis of proteases, substrates and inhibitors. Biochem Soc Trans 2007;35:599-603.
7. Ordonez GR, Puente XS, Quesada V, Lopez-Otin C. Proteolytic systems: constructing degradomes. Methods Mol Biol 2009;539:33-47.

03 July 2009

Whether or Not to Take Vitamin C

Unlike most other mammals, humans and other primates don't synthesize vitamin C because we lack the enzyme glunolactone oxidase (1). The enzyme was lost long ago without affecting our survival due to frequent intake of high-vitamin C fruits and vegetables.

Thus, we must continue to get vitamin C from our diet by the same manner (fruits or veggies) or otherwise, lest we succumb to scurvy as British sailors did in the early 1800s before they adopted rationing limes on naval vessels (1).

Vitamin C deficiency leading to scurvy is now rare (1) and in the developed world, but studies on North American and European populations have found that many people who do not eat enough fruits and high-vitamin C vegetables continue to have inadequate levels of vitamin C (2;3).

Supplementation or dietary change would serve the majority of these patients because—when taken along with other vitamins—vitamin C may lead to reduced risk of chronic diseases such as cancer, cardiovascular disease and cataracts (1). The antioxidant vitamin is thought to possibly have a role in counteracting and detoxifying carcinogens, preventing myocardial lipid peroxidation and LDL oxidation, and prevent oxidative damage to lens in the eye (1).

Note that the vitamin has not been found to have any effect on reducing risk of colds (1). This is in contrast to what's marketed on many dietary supplements.

Large intakes of vitamin C (above 2g daily) can cause diarrhea (1). The vitamin C competes with uric acid inhibiting renal absorption of uric acid that can lead to increases of uric acid excretion, urine acidification and precipitation of uric acid crystals (1). This may increase risk of urate kidney stones if high doses are taken chronically (1). Chronic high doses may not be appropriate also for those with iron metabolism disorders since vitamin C increases iron absorption (1).

Recommended dietary intake levels are 75mg for women and 90 mg for men (1). If pregnant, elderly, smoking or afflicted with chronic disease, a little more may be needed (4-6). Supplementation with a multivitamin may be sufficient for oxidative stress protection, however, findings on reducing risk of chronic disease are mostly related to antioxidant vitamin intake from fruit and vegetables (6-10).

Based on the above rationale, I would recommend patients first attempt to increase fruit and vegetable consumption to meet desired plasma levels and with optimal synergistic effects of other vitamins. If there’s any doubt of the patient’s ability or motivation to eat fruits and vegetables, then vitamin C in form of a multivitamin would be the next step.

Reference List

1. Gropper SS, Smith JL, Groff JL. Advanced Nutrition and Human Metabolism. Belmont, CA: Thomson Wadsworth, 2009.
2. Hampl JS, Taylor CA, Johnston CS. Vitamin C deficiency and depletion in the United States: the Third National Health and Nutrition Examination Survey, 1988 to 1994. Am J Public Health 2004;94:870-5.
3. Taylor CA, Hampl JS, Johnston CS. Low intakes of vegetables and fruits, especially citrus fruits, lead to inadequate vitamin C intakes among adults. Eur J Clin Nutr 2000;54:573-8.
4. Valdes F. [Vitamin C]. Actas Dermosifiliogr 2006;97:557-68.
5. Brubacher D, Moser U, Jordan P. Vitamin C concentrations in plasma as a function of intake: a meta-analysis. Int J Vitam Nutr Res 2000;70:226-37.
6. Goodwin JS, Brodwick M. Diet, aging, and cancer. Clin Geriatr Med 1995;11:577-89.
7. Genkinger JM, Platz EA, Hoffman SC, Comstock GW, Helzlsouer KJ. Fruit, vegetable, and antioxidant intake and all-cause, cancer, and cardiovascular disease mortality in a community-dwelling population in Washington County, Maryland. Am J Epidemiol 2004;160:1223-33.
8. Nagyova A, Krajcovicova-Kudlackova M, Horska A et al. Lipid peroxidation in men after dietary supplementation with a mixture of antioxidant nutrients. Bratisl Lek Listy 2004;105:277-80.
9. Broekmans WM, Klopping-Ketelaars IA, Schuurman CR et al. Fruits and vegetables increase plasma carotenoids and vitamins and decrease homocysteine in humans. J Nutr 2000;130:1578-83.
10. Zino S, Skeaff M, Williams S, Mann J. Randomised controlled trial of effect of fruit and vegetable consumption on plasma concentrations of lipids and antioxidants. BMJ 1997;314:1787-91.

12 June 2009

Iron Man

Iron is abundant in the world and needed by every living organism. For this reason early in evolution multi-cellular organisms evolved antimicrobial peptides(1). Without them we just wouldn't be able to survive the onslaught of microbial growth (1).

In addition, free iron in plasma has redox capabilities that can also be toxic. The toxicity is due to the Haber-Weiss-Fenton sequence, which forms hydroxyl radicals due to superoxide after reduction of dioxygen (1). The hydroxyl radicals can then act detrimentally on proteins, nucleic acids, carbohydrates and also cause lipid peroxidation (1).

In animals, heme is the moiety that holds a central iron atom within a porphyrin ring structure (1). Most of the body’s iron is contained as heme acting in various functions, but mainly necessary as an oxygen carrier within hemoglobin of blood cells and myoglobin in muscles (1). Heme synthesis requires iron to be in a reduced ferrous state, which is why ferriductases are important for iron metabolism (1).

Of the total amount of iron received from the diet, only 10 percent is generally absorbed. Of clinical importance, dietary iron is best if derived from animal products, which contains heme iron (1). Nonheme iron, found in both animal and plant-based foods, is not absorbed as well, although absorption of nonheme iron is increased at times of iron deficiency (1).

Reference List

1. McCord JM. Iron, free radicals, and oxidative injury. J Nutr 2004;134:3171S-2S. Available at: http://jn.nutrition.org/cgi/content/full/134/11/3171S.
2. Modern Nutrition in Health and Disease. Baltimore, MD: Lippincott Williams & Wilkins, 2009.

07 June 2009

Hominin diets could reveal a lot about our own

Just in case anyone's interested, I had the great opportunity to discuss nutrition science today with none other than Lucy discoverer Donald Johanson. What luck!

After explaining to Johanson of studying "evolutionary discordance" of diet post-agricultural revolution, he pointed me in the direction of a book related to hominin diets based on studies of hominin teeth.

This revelation led me to have a great interest in what further studies could be put together. I imagine randomized, controlled trials involving diets of humans on pre-human diets. Not only could the data help us better understand certain adaptions in our own digestive systems, but also what possible other "evolutionary discordances" that may have occured during a time when humans actually became human.

At the same event I spoke to another evolutionary biologist who suggested that fire had a key role in allowing our digestive system to adapt to a higher-energy diet.

The book recommended by Don Johanson was by Peter Ungar. A link to an article on the subject of diet and hominin teeth is found here.

05 June 2009

Life adapted to the beach or the cooking pot?

Last night I met up with perhaps the most famous biologist on the planet, PZ Myers. How? He was just hanging out at a bar in town. Couldn't believe my luck! I brought up all my evolutionary nutrition ideas to him.

In case anyone's interested (does anyone read this blog?), PZ was fond of this recent article of Wrangham who wrote Catching Fire: How Cooking Made Us Human.

The book, by the way, pretty much shuts down the raw-foodist movement suggesting that cooking was absolutely essential for our species to get along in the world.

Also, I brought up archaeologist Curtis Marean's suggestion that "humans adapted to a life on the beach" eating shellfish and gaining omega-3 oils to form bigger brains.

PZ raised his eyebrows and said something like, "Humans are just too opportunistic to have been that limited in diet."

He went on to discuss amylase gene copy number variations of which I found fascinating. Nature article about it here.

05 February 2009

Evolutionary Discordance

There is a surging interest in perspectives of evolution to shed light on solutions for health—not at all discounted by this year’s Charles Darwin’s 200th birth anniversary. Many health-care professionals have even called for a return to a more primitive pattern of diet, environment and exercise that first made our ancient genome thrive (1-8).

Cordain et al (3) and others (1;4) make nothing short of an understatement in suggesting that contemporary chronic diseases and health issues are partially, if not largely, due to an evolutionary “clashing” (3;4) with new patterns introduced in our modern world.

Attempts of Cordain et al (3), however, of pointing out nutritional alterations since the agricultural revolution to reveal “evolutionary discordance” between Western diet and one in line with “genetically determined biology” can be considered far reaching.

An example is Cordain et al’s case that refined sugar consumption increased since 500 BC and high-fructose corn syrup since the 1970s may have caused discordance (3). Lacking evidence directly associated with hominin diets, it is left unknown how simple sugars may have actually shaped evolution of hominins.

The data, however, on ape diets suggests a fruitarian ancestry governed by plants (1). Although the sugars of these fruits are evidenced to have been accompanied by diverse dietary fiber sources (5), nutritional variations may have occurred not unlike refined sugars and large amounts of fructose. It is also unclear why fructose, heavily associated with diabetes (9-11), should be prevalent in the main foods of a hominin ancestral diet.

Science must ultimately make up perceptions on factual matter regarding nutrition and medicine where historical and archeological evidence fall short and can only present clues.

Double-blind, randomized cross-over designed trials on each discordance—cereals, refined sugars, refined vegetable oils, alcohol, salt, fatty domestic meats, etc.—and how differing amounts affect health must be researched for proper nutritional determinations.

For example, two interventions over a year’s time could be performed in which one group could be given wild-caught salmon and deer meat and the placebo group would receive farmed salmon and deer meat. Blood lipids and abdominal fat stores can be measured throughout the year.

Because of possible interplay from each discordance that should not be discounted, double-blind randomized cross-over trials should also include versions of whole, supposed Paleolithic diets.

Each study performed, in turn, may also offer revelations into evolutionary past. And perhaps, to make things more interesting, the studies should also be performed on bonobos and chimpanzees.

Reference List

1. Boaz N. Evolving Health: The Origins of Illness and How the Modern World is Making us Sick. New York: John Wiley & Sons, 2009.
2. Cordain L. The Paleo Diet. Hoboken, New Jersey: John Wiley & Sons, 2002.
3. Cordain L, Eaton SB, Sebastian A et al. Origins and evolution of the Western diet: health implications for the 21st century. Am J Clin Nutr 2005;81:341-54.
4. Gibson G. It Takes a Genome: How a Clash Between Our Genes and Modern Life is Making us Sick. Sydney, Australia: FT Press, 2009.
5. Leach JD. Evolutionary perspective on dietary intake of fibre and colorectal cancer. Eur J Clin Nutr 2007;61:140-2.
6. Marean CW, Bar-Matthews M, Bernatchez J et al. Early human use of marine resources and pigment in South Africa during the Middle Pleistocene. Nature 2007;449:905-8.
7. Nesse RM, Williams GC. Why We Get Sick: The New Science of Darwinian Medicine. New York: Vintage, 1996.
8. Wrangham R. Catching Fire: How Cooking Made Us Human. New York: Basic Books, 2009.
9. Sartorelli DS, Franco LJ, Gimeno SG, Ferreira SR, Cardoso MA. Dietary fructose, fruits, fruit juices and glucose tolerance status in Japanese-Brazilians. Nutr Metab Cardiovasc Dis 2009;19:77-83.
10. Ouyang X, Cirillo P, Sautin Y et al. Fructose consumption as a risk factor for non-alcoholic fatty liver disease. J Hepatol 2008;48:993-9.
11. Basciano H, Federico L, Adeli K. Fructose, insulin resistance, and metabolic dyslipidemia. Nutr Metab (Lond) 2005;2:5.

07 November 2008

A Tale of Two Bacterial Strains

It was the hottest of times, it was the coldest of times, and it was billions of years before the French revolution when one bacterial strain became two and possibly a few more.1p630 One of these strains would thrive in what we now know to be the Arctic Cold.1p627 Another would survive in the vents of a volcano.1p627 Not so coincidentally, both strains depend on vital functions of hexokinase.1p627 Normally hexokinase would become denatured while exposed to hot, molten rock.1p627

How does the volcano strain survive? The answer lies in significantly more R group interactions of amino acids found in holding its tertiary structure together.1p630 These noncovalent interactions play their role of stability via hydrogen bonding, ionic bonding and van der Waals forces.1p614 The extra support keeps hexokinase's globular protein alpha-helix and beta-pleated sheets from unfolding.1p609

Although perhaps not nearly complex as R group interactions, the bacterial strains would require another variation: maintaining membrane fluidity.1p582 The two bacterial strain's membrane lipids differ in their ratios of saturated and unsatured fats.1p582 While North Pole bacteria require a greater percentage of unsaturated fat double-bond "kinks" for their membranes to stay fluid, the membranes of bacteria in a firy environment are usually made up of a higher percentage of saturated fats.1p582

What does this information mean for humankind? The mystery of the beginning of life may partially lie in how both bacterial strains developed. Animals and plants both contain hexokinase, which plays roles in glycolysis and possibly sugar signal transduction pathways.1p726 & 2 Additionally all cells contain membrane lipids.1p557 Thus, the more we learn about these bacteria, the more we may learn about ourselves and our own humble origins.

References

1. Denniston, KJ, Topping, JJ, Caret, RL. General, Organic, and Biochemistry, 5th ed. New York: McGraw Hill; 2007.

2. Sheen, J, Jang, J. The role of hexokinase in plant sugar signal transduction and growth and development. Plant Molec Biol. 2000;44:451–461. Available at: http://genetics.mgh.harvard.edu/sheenweb/reprints/sugarPMB00.pdf. Accessed on November 5, 2008.

15 September 2008

Even a Caveman Can Eat Low-Carb

With good reason carbohydrates (carbs) are the staple fuel source for most diets in the world. Not only are they plentiful and cheap to produce—created by plant photosynthesis—but also utilized easily by the body. The body’s process, in fact, according to Staci Nix, MS, RD, CD, is “far more efficient than any man-made machine (2005, p.16). There are different types of carbs: the simple, which are quickly absorbed by the body, and the complex, which are more slowly absorbed.

Simple carbs have one sugar molecule such as monosaccharides such as glucose, fructose and galactose, or disaccharides such as sucrose, lactose and maltose (Nix, 2005, pp. 16-17). The complex carbs (polysaccharides) include starches, glycogen, dietary fiber, cellulose, noncellulose polysaccharides and lignins. With the exception of dietary fiber and noncellulose polysaccharides, the body breaks down these carb types, turns them into glucose and distributes the glucose through blood circulation to all the cells that need it in the body.

The glucose—whether produced by simple or complex carbs—is not only important for energy, but for sparing the need to use stores of protein and fat, which can be used to sustain the body in other ways (Nix, 2005, p. 24). More important is glucose’s role in supplying adequate fuel to the nervous system including the brain (p. 24). Unlike carbs, protein and fat energy cannot supply a constant stream of glucose to the brain, giving carbohydrates a role that is vital for life.

The amount of carbohydrates needed in the diet, however, has been a hotly contested debate. Nix mentions that sugar is not “the villain,” but that too much of its use is problematic (2005, p.24). Harvard nutritionist and physician Walter Willet, Ph.D. Willet agrees that the USDA food pyramid should be modified to steer people away from refined carb foods. They provide little nutrients, he says, but more detrimentally, they spike blood glucose causing higher needs for insulin only to bring glucose “crashing down” (Discover, 2003, http://discovermagazine.com/2003/mar/breakdialogue). The scenario happening regularly adds to higher risk of Type II diabetes. His “Healthy Eating Pyramid” stresses more focus on whole grains and fruits and vegetables and not the refined carbs (President and Fellows at Harvard College, 2008, http://www.hsph.harvard.edu/nutritionsource/what-should-you-eat/pyramid/index.html).

Low-carb dieting for encouraging weight loss has been led partly by some who have developed theories surrounding the diet of early humans. According to Loren Cordain, Ph.D., (2002, Chapter 1 [digital version]) and Noel T. Boaz (2002, Location 2309, Table 7 [digital version]), both top-selling authors of books with collected research on human evolution and diet of Paleolithic populations, suggest that the body may be adapted to a diet of high-protein, high-fiber, and low-carbohydrates.

Significant health problems, however, can occur as a result of low-carb dieting and should not be overlooked. Without enough carbs the body has to use the body’s protein and fat supply for creating quick energy (p. 24). According to Nix, muscle may be catabolized for its protein, muscle maintenance prevented, and the break down of fat stores for fast fuel can result in “incomplete fat oxidation”, thus creating an excess of strongly acidic ketones (2005, p.24). The ketoacidosis that occurs can become toxic to the body.

Many may have found themselves with ketoacidosis when on an extremely low-carb diet. A report in The Lancet of a 40-year-old woman hospitalized while following the popular low-carb Atkins diet is just one of several reports (Groch, 2006,http://www.medpagetoday.com/PrimaryCare/DietNutrition/tb/2878.). She had eaten nothing but meat, cheese and salad for in the month before the event. Criticism along with the report included comments by Lyn Steffen, Ph.D., M.P.H. and Jennifer Nettleton, Ph.D., who said the ketoacidosis would lead to “constipation, halitosis, diarrhea, headache and fatigue,” and long-term ketoacidosis would create problems for the kidneys and bones. Note that the Atkins diet has since been revised, according to Atkins Nutritionals (2008, http://www.atkins.com).

Considered moderately low-carb, the Mediterranean diet, which includes plenty of fruits, vegetables, and monounsaturated oils may be a better choice. According to an Israeli study published in the New England Journal of Medicine on three typical diets—a typical low-fat diet, a pre-revised-Atkins diet and the Mediterranean diet (based on recommendations by Walter Willet)—all the diets were regarded as safe, both low-carbohydrate diets provided metabolism benefits, but only the Mediterranean diet showed significant improvement for glucose and insulin levels (Shai et al, 2008). When it comes to carbs, as Staci Nix points out, “moderation is once again is the key” (2005, p. 24).



References

Atkins Nutritionals Inc. (2008). “Thoughtful approach. Powerful science.” Retrieved on Sept. 12, 2008 from http://www.atkins.com.

Boaz, N.T. (2002). Evolving Health: The Origins of Illness and How the Modern World Is Making Us Sick [digital version]. New York: John Wiley & Sons.

Cordain, L. (2002). The Paleo Diet: Lose Weight and Get Healthy by Eating the Food You Were Designed to Eat [digital version].New York: John Wiley & Sons.

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